<?xml version="1.0" encoding="ISO-8859-1"?><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<front>
<journal-meta>
<journal-id>0123-3475</journal-id>
<journal-title><![CDATA[Revista Colombiana de Biotecnología]]></journal-title>
<abbrev-journal-title><![CDATA[Rev. colomb. biotecnol]]></abbrev-journal-title>
<issn>0123-3475</issn>
<publisher>
<publisher-name><![CDATA[Instituto de Biotecnología, Universidad Nacional de Colombia]]></publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id>S0123-34752014000200017</article-id>
<article-id pub-id-type="doi">10.15446/rev.colomb.biote.v16n2.41004</article-id>
<title-group>
<article-title xml:lang="en"><![CDATA[Antibiotic- and heavy-metal resistance in bacteria isolated from deep subsurface in El Callao region, Venezuela]]></article-title>
<article-title xml:lang="es"><![CDATA[Resistencia a antibioticos y metales pesados en bacterias aisladas de subsuelo en la región El Callao, Venezuela]]></article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Rojas Pirela]]></surname>
<given-names><![CDATA[Maura Lina]]></given-names>
</name>
<xref ref-type="aff" rid="A01"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Botello Suárez]]></surname>
<given-names><![CDATA[Wilmar Alirio]]></given-names>
</name>
<xref ref-type="aff" rid="A01"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Ball Vargas]]></surname>
<given-names><![CDATA[María Mercedes]]></given-names>
</name>
<xref ref-type="aff" rid="A01"/>
</contrib>
</contrib-group>
<aff id="A01">
<institution><![CDATA[,Universidad de Los Andes Facultad de Ciencias Laboratorio de Microbiología Molecular y Biotecnología]]></institution>
<addr-line><![CDATA[ ]]></addr-line>
<country>Venezuela</country>
</aff>
<pub-date pub-type="pub">
<day>00</day>
<month>12</month>
<year>2014</year>
</pub-date>
<pub-date pub-type="epub">
<day>00</day>
<month>12</month>
<year>2014</year>
</pub-date>
<volume>16</volume>
<numero>2</numero>
<fpage>141</fpage>
<lpage>149</lpage>
<copyright-statement/>
<copyright-year/>
<self-uri xlink:href="http://www.scielo.org.co/scielo.php?script=sci_arttext&amp;pid=S0123-34752014000200017&amp;lng=en&amp;nrm=iso"></self-uri><self-uri xlink:href="http://www.scielo.org.co/scielo.php?script=sci_abstract&amp;pid=S0123-34752014000200017&amp;lng=en&amp;nrm=iso"></self-uri><self-uri xlink:href="http://www.scielo.org.co/scielo.php?script=sci_pdf&amp;pid=S0123-34752014000200017&amp;lng=en&amp;nrm=iso"></self-uri><abstract abstract-type="short" xml:lang="es"><p><![CDATA[Se investigó el efecto de la contaminación con mercurio (Hg) en las comunidades bacterianas del subsuelo profundo en la región de El Callao (Estado Bolívar, Venezuela). Se estudiaron comunidades bacterianas de dos niveles de profundidad (-288 m y -388 m) en una mina de oro con el propósito de describir las características más relevantes de las bacterias indígenas cultivables que colonizaban esta mina. Se evaluaron los patrones de resistencia a antibióticos y metales pesados, presencia del gen merA y plásmidos en aislados resistentes. Se encontró una elevada frecuencia de bacterias indígenas resistentes al Hg y otros metales pesados. De 76 aislados Hg-resistentes probados 73.7 % fueron adicionalmente resistentes a ampicilina; 86.8 % a cloranfenicol; 67.1 % a tetraciclina; 56.6 % a estreptomicina y 51.3 % a kanamicina. Además, se encontró que 40.74 % (-328 m) y 26.53 % (-388 m) de las bacterias Hg-resistentes fueron simultáneamente resistentes tanto a cuatro como a cinco de estos antibióticos. Se detectó la presencia de plásmidos de alto y bajo peso molecular y, a pesar de que los aislados mostraban resistencia a compuestos mercuriales, la presencia del gen merA fue detectada solo en 71.05 % de los cepas. Estos resultados sugieren que la exposición a Hg podría ser una presión selectiva en la proliferación de bacterias resistentes a antibióticos y promover el mantenimiento y propagación de estos genes de resistencia. Sin embargo, la existencia de tales resistencias a estas profundidades podría también apoyar la idea de que la resistencia a antibióticos en estas bacterias es natural y tiene un origen más antiguo que su exposición al Hg.]]></p></abstract>
<abstract abstract-type="short" xml:lang="en"><p><![CDATA[The effect of contamination with mercury (Hg) in the deep subsurface bacterial communities in the region of El Callao (Bolívar State, Venezuela) was investigated. Bacterial communities from two deep levels (-288 m and -388 m) in a gold mine were studied with the aim of describe the most relevant features of their colonizing indigenous culturable bacteria. Antibiotic and heavy metals resistance patterns, presence of the merA gene and plasmids in resistant isolates were evaluated. A high frequency of resistant indigenous bacteria to Hg and other heavy metals was found. From 76 Hg-resistant isolates tested 73.7 % were, in addition, resistant to ampicillin, 86.8% to chloramphenicol, 67.1 % for tetracycline, 56.6 % streptomycin, and 51.3 % kanamycin. Furthermore, it was found that 40.74 % (-328 mm) and 26.53 % (-388 m) of Hg-resistant bacteria were simultaneously resistant to both four and five of these antibiotics. The presence of low and high molecular weight plasmids was detected and, despite that isolated showed resistance to mercurial compounds, the presence of the gene merA was detected only in 71.05 % of strains. These results suggest that exposure to Hg could be a selective pressure on the proliferation of antibiotic-resistant bacteria and promote the preservation and propagation of these resistance genes. However, the existence of such resistances to these depths could also support the idea that antibiotic resistance in these bacteria is natural and has a more ancient origin than their exposure to Hg.]]></p></abstract>
<kwd-group>
<kwd lng="es"><![CDATA[bacterias del subsuelo]]></kwd>
<kwd lng="es"><![CDATA[resistencia]]></kwd>
<kwd lng="es"><![CDATA[mercurio]]></kwd>
<kwd lng="es"><![CDATA[antibióticos]]></kwd>
<kwd lng="es"><![CDATA[plásmidos]]></kwd>
<kwd lng="en"><![CDATA[subsurface bacteria]]></kwd>
<kwd lng="en"><![CDATA[resistance]]></kwd>
<kwd lng="en"><![CDATA[mercury]]></kwd>
<kwd lng="en"><![CDATA[antibiotic]]></kwd>
<kwd lng="en"><![CDATA[plasmid]]></kwd>
</kwd-group>
</article-meta>
</front><body><![CDATA[  <font size="2" face="verdana">     <p><a href="http://dx.doi.org/10.15446/rev.colomb.biote.v16n2.41004" target="_blank">http://dx.doi.org/10.15446/rev.colomb.biote.v16n2.41004</a></p>     <p align="right">ART&Iacute;CULO  DE INVESTIGACI&Oacute;N</p>     <p><font size="4"><b>Antibiotic- and heavy-metal  resistance in bacteria isolated from deep</b> <b>subsurface in El Callao region, Venezuela</b></font></p>     <p><b><font size="3">Resistencia a antibioticos y metales pesados en  bacterias aisladas</font></b> <font size="3"><b>de subsuelo en la regi&oacute;n El Callao, Venezuela</b></font></p>     <p><b><i>Maura Lina Rojas Pirela, Wilmar Alirio Botello Su&aacute;rez, Mar&iacute;a  Mercedes Ball Vargas</i></b>    <br>   Laboratorio de Microbiolog&iacute;a Molecular y Biotecnolog&iacute;a, Facultad  de Ciencias, Universidad de Los Andes. M&eacute;rida 5101, Venezuela.    <a href="mailto:maura.r@ula.ve">maura.r@ula.ve</a>, <a href="mailto:mball@ula.ve">mball@ula.ve</a>, <a href="mailto:wbotello@unisangil.co">wbotello@unisangil.co</a>. Corresponding author: Laboratorio de Microbiolog&iacute;a Molecular y  Biotecnolog&iacute;a, Facultad de Ciencias, Universidad de Los Andes. M&eacute;rida 5101, Venezuela. <a href="mailto:mball@ula.ve">mball@ula.ve</a>.</p>     <p><b>Recibido</b>: febrero 10 de 2014 <b>Aprobado</b>: octubre 20 de 2014</p> <hr />     <p><b>Resumen</b></p>     <p>Se  investig&oacute; el efecto de la contaminaci&oacute;n con mercurio (Hg) en las comunidades  bacterianas del subsuelo profundo en    la  regi&oacute;n de El Callao (Estado Bol&iacute;var, Venezuela). Se estudiaron comunidades bacterianas de dos niveles de profundidad   (-288  m y -388 m) en una mina de oro con el prop&oacute;sito de describir las  caracter&iacute;sticas m&aacute;s relevantes de las bacterias ind&iacute;genas   cultivables  que colonizaban esta mina. Se evaluaron los patrones de resistencia a  antibi&oacute;ticos y metales pesados,   presencia  del gen <i>merA </i>y pl&aacute;smidos en aislados resistentes. Se encontr&oacute; una elevada  frecuencia de bacterias ind&iacute;genas   resistentes  al Hg y otros metales pesados. De 76 aislados Hg-resistentes probados 73.7 %  fueron adicionalmente resistentes   a  ampicilina; 86.8 % a cloranfenicol; 67.1 % a tetraciclina; 56.6 % a  estreptomicina y 51.3 % a kanamicina. Adem&aacute;s,   se  encontr&oacute; que 40.74 % (-328 m) y 26.53 % (-388 m) de las bacterias  Hg-resistentes fueron simult&aacute;neamente resistentes   tanto  a cuatro como a cinco de estos antibi&oacute;ticos. Se detect&oacute; la presencia de  pl&aacute;smidos de alto y bajo peso molecular y,   a  pesar de que los aislados mostraban resistencia a compuestos mercuriales, la  presencia del gen <i>merA </i>fue detectada solo   en  71.05 % de los cepas. Estos resultados sugieren que la exposici&oacute;n a Hg podr&iacute;a ser  una presi&oacute;n selectiva en la proliferaci&oacute;n   de  bacterias resistentes a antibi&oacute;ticos y promover el mantenimiento y propagaci&oacute;n  de estos genes de resistencia.   Sin  embargo, la existencia de tales resistencias a estas profundidades podr&iacute;a  tambi&eacute;n apoyar la idea de que la resistencia a antibi&oacute;ticos  en estas bacterias es natural y tiene un origen m&aacute;s antiguo que su exposici&oacute;n  al Hg.</p>     ]]></body>
<body><![CDATA[<p><b>Palabras clave</b>: bacterias  del subsuelo, resistencia, mercurio, antibi&oacute;ticos, pl&aacute;smidos.</p>     <p><b>Abstract</b></p>     <p>The effect of contamination with mercury  (Hg) in the deep subsurface bacterial communities in the region of El Callao  (Bol&iacute;var    State, Venezuela) was investigated.  Bacterial communities from two deep levels (-288 m and -388 m) in a gold mine   were studied with the aim of describe  the most relevant features of their colonizing indigenous culturable bacteria.  Antibiotic   and heavy metals resistance patterns,  presence of the <i>merA </i>gene and plasmids in resistant isolates were  evaluated.   A high frequency of resistant indigenous  bacteria to Hg and other heavy metals was found. From 76 Hg-resistant isolates   tested 73.7 % were, in addition,  resistant to ampicillin, 86.8% to chloramphenicol, 67.1 % for tetracycline,  56.6 % streptomycin,   and 51.3 % kanamycin. Furthermore, it  was found that 40.74 % (-328 mm) and 26.53 % (-388 m) of Hg-resistant   bacteria were simultaneously resistant  to both four and five of these antibiotics. The presence of low and high  molecular   weight plasmids was detected and,  despite that isolated showed resistance to mercurial compounds, the presence of  the   gene <i>merA </i>was detected only in 71.05 % of strains.  These results suggest that exposure to Hg could be a selective pressure   on the proliferation of  antibiotic-resistant bacteria and promote the preservation and propagation of  these resistance genes.   However, the existence of such  resistances to these depths could also support the idea that antibiotic  resistance in these bacteria is natural and has a more  ancient origin than their exposure to Hg.</p>     <p><b>Keywords</b>: subsurface bacteria, resistance,  mercury, antibiotic, plasmid.</p> <hr />     <p><b><font size="3">Introduction</font></b></p>     <p>In the past decades it was  thought that life of prokaryotic-   type organisms was only  possible in the shallow   subsurface, these being not  capable of living to great   depths of the surface.  However, now it is known that   the deep subsurface  represents one of the most promising   reservoirs of living  organisms, mainly prokaryotes,   which may exhibit unexpected  metabolic abilities (Moser  <i>et al</i>.,  2005; Parkes <i>et al</i>., 2010) Nowadays, the study   of subsurface microorganisms  has bright future, and   is considered an emerging  frontier in the fields of microbial   biodiversity and life at  extreme environments (Fredrickson and Balkwill,  2006, Wang <i>et  al</i>.,  2013).</p>     <p>On the other hand, the  potential application of subsoil   bacteria in bioremediation  of contaminated environments   is receiving increasing  attention. In this regard,    gold mines offer an  excellent opportunity to study subterranean   microbial communities  because they provide   an easy access (sometimes  &gt;8000 ft.) to greater   depths of terrestrial  subsurface, allowing thus cheaperand   aseptic-horizontal drilling  of deeper strata. Furthermore,   by this route it is possible  to have multiple   access points at different  depths to follow the evolutionary   history of microbial  populations, some of which   may have stayed isolated from terrestrial surface by   thousands of years.  Moreover, the enormous amount   of geologic and hydrologic  information accumulated   by mining companies can be  easily integrated with biological   results. To date, gold mines  from South Africa   (Takai <i>et al</i>., 2001,  Chivian <i>et  al</i>., 2008),  Japan (Hirayama  <i>et al</i>., 2005),  USA (Rastogi <i>et  al., </i>2010,  Rastogi <i>et</i> <i>al</i>.,  2013) and Australia (Adams <i>et al</i>., 2013) have been screened for subsurface  life.</p>     <p>Gold reservoirs in the El  Callao area (Bol&iacute;var State, Venezuela)    have been exploited since  1850, with over   200 metric tons produced  (Hildebrand, 2005). Colombia   Mine, a gold reservoir  located near to El Callao   town, is a &gt;500m deep,  active gold mine. A vast area   surrounding Colombia Mine is  highly contaminated   with mercury (Hg). Indeed,  this contaminant is discharged   by artisanal miners in its metallic form into   hundreds of artificial ponds  (&quot;tailing-ponds&quot;) spread   over several square  kilometers. Mercury emission in El   Callao area has been  estimated over 12tons/y (Veiga  <i>et al</i>.,  2005). As a consequence, bacteria thriving in   natural water-bodies and/or  tailing-ponds exhibit high   frequencies of  Hg-resistance, as it have been shown   in our previous work (Ball <i>et  al</i>.,  2007, G&oacute;mez <i>et al</i>., 2013).</p>     <p><b><font size="3">Material and methods</font></b></p>     <p><b><i>Site and  sampling methods</i></b></p>     ]]></body>
<body><![CDATA[<p>Colombia Mine is located  near to El Callao town (Bolivar    State, Venezuela; latitude:  7 21&#39; 00&#39;&#39;; longitude:   -61 49&#39; 00&#39;&#39;). Most water samples  were collected from   existing exploratory  boreholes and roof fractures located   at -288m (level IV) and  -388m (level VI) below the   mine entrance (22m above the  sea level and -78m below   the sea level,  respectively). The flowing boreholes,   with different configurations and ages ranging from 10   to 50 years at the sampling  time, exhibited high flow   rates (i.e. tens of  liters.h-1). Water samples were collected   directly from the flowing  boreholes into sterile glass tubes.</p>     <p><b>Chemical analysis</b></p>     <p>Chemical analysis of major  cations and trace metals,<i>i.e. </i>Al, As, Ba, Ca, Cd, Co, Cu, Cr, Fe, Mn, Se, Ni, Pb   and Zn, in the water samples  was conducted at the   Laboratorio Regional de Servicios Anal&iacute;ticos (LARSA,   Universidad de Los Andes, M&eacute;rida, Venezuela). All   water samples were  prefiltered with a 0.45 &mu;m filter   and analyzed by Inductively  Coupled Plasma Atomic   Emission Spectroscopy on a  Varian Liberty AX instrument.   Mercury was detected on  aliquots of each sample,   previously acidified by  adding a few drops of pure   HCl, by Atomic Absorption  Spectroscopy (AAS), using a recently developed method  (Duran <i>et  al</i>.,  2005).</p>     <p><b><i>Isolation of  pure cultures</i></b></p>     <p>This study focused  specifically on aerobic chemoheterotrophic    bacteria. Therefore,  bacterial strains   were isolated from water  samples at each sampling   site for further study by  serially diluting and spreading   on 1/3-strength  Luria-Bertani agar (LB(1:3); tryptone   3.3g/L, yeast extract  1.6g/L, NaCl 3.3g/L, agar   15.0g/L). The plates were  incubated at 30&deg;C and colony   forming units (CFU) were enumerated after 48h   of growth. Morphologically  distinct colony types were   selected for further  studies. The isolates were subsequently   streaked and re-streaked on  fresh plates in order   to obtain axenic cultures.  Then, the isolated strains   were grown in liquid LB  (1:3) and frozen in 20% glycerol at -80 &deg;C.</p>     <p><b><i>Determination  of heavy metal</i></b> <b><i>and  antibiotic-resistance</i></b></p>     <p>Mercury-resistance for each  isolate was determined    by streaking the cells onto  1/3-strength LB agar plates   amended with a) mercuric  chloride (HgCl<sub>2</sub>) (from  10   to 80mg/L) and b) methyl  mercury (MeHg) (from 3   to 5mg/L). Stock solutions  of HgCl<sub>2</sub> and  Me-Hg were   sterilized by  ultra-filtration, kept cold in the dark, and   added to the medium after  autoclaving and cooling.   The minimum HgCl<sub>2</sub> concentration  which allowed distinguishing   resistant from sensitive  isolates was determined   by performing preliminary  assays using reference   strains. These consisted of  strains carrying characterized   Hg-resistance determinants (<i>Pseudomonas  stutzeri</i>  OX and <i>Bacillus  cereus </i>5)  (Izaki, 1981; Reniero, 1998)   and either their sensitive  mutants or phylogenetically    related strains (<i>Pseudomonas  stutzeri </i>OX 1 and <i>Bacillus</i> <i>cereus </i>ATCC  14579) (Benyehuda <i>et al</i>., 2003).</p>     <p>Therefore, strains resistant  to at least 10mg/L of HgCl<sub>2</sub>    were considered as HgR and  selected for further studies.   On the other hand,  heterotrophic isolates were   grown in the presence of  either 2 or 5mM of the following   metals: Cu<sup>2+</sup> (used  as CuSO<sub>4</sub>), Pb<sup>2+</sup> (used  as   Pb(NO<sub>2</sub>)<sub>3</sub>), Ni<sub>2</sub><sup>+</sup> (used as NiSO<sub>4</sub>) and  Zn<sup>2+</sup> (used  as   ZnCl<sub>2</sub>). The plates were incubated  at 30&deg;C during 48h.   Strains DH5&alpha; and  JM101 of <i>E.  coli </i>K-12  were used as negative controls (=  sensitive strains).</p>     <p>All subsurface isolates were  screened also for resistance    to a wide range of classes  of antibiotics: tetracycline   (Tet) (30&mu;g/ml), chloramphenicol (Cam) (30&mu;g/ml),   kanamycin (Kan) (30&mu;g/ml), streptomycin (Strp) (30  &mu;g/ml),  and ampicillin (Amp) (40&mu;g/ml). Selective media   were prepared by  incorporating the antimicrobial   agent into the 1/3-strength  LB agar. Concentrations   used were above the highest  inhibitory concentration   listed in the Performance  Standards for Antimicrobial   Susceptibility Testing  (2005), except for kanamycin.   The strains were reactivated  from frozen stocks, plated   on selective media  (triplicate) and checked for growth   after 24, 48, and 72h.  Results were recorded as sensitive or resistant; intermediate  growth was not considered.</p>     <p><b><i>Minimum  Inhibitory Concentration Assays</i></b></p>     ]]></body>
<body><![CDATA[<p>In order to establish the  Minimal Inhibitory Concentration    (MIC) for Hg, the Hg<sup>R</sup> strains  were assayed with   an Hg<sub>2</sub><sup>+</sup> concentration series in  1/3-strength LB broth   using a 96-well microtiter  plate. The well contained   200&mu;l of broth and Hg at concentrations ranging  from   10, 20, 40 and 80&mu;M (2.72 to 21.8 mg/L HgCl<sub>2</sub>). Each   well was inoculated with a  10&mu;l aliquot of the  correspondent   HgR strain in the late  exponential phase, at an   initial optical density at  600nm (OD600) of 0.03, and   the plates were incubated at  30&deg;C for 24h. Each experiment   was performed in triplicate.  The lowest concentration of the metallic compound  that caused no   visible growth was  considered as the MIC. The isolates   were considered resistant if  the MIC value exceeded   that of the <i>E.  coli </i>K-12 strain,  which was used as the control (Akinbowale <i>et  al</i>.,  2007).</p>     <p><b><i>Detection of  merA orthologs</i></b></p>     <p>The <i>merA </i>gene,  which belongs to the <i>mer </i>operon and    encodes a cytoplasmic  mercuric reductase, was amplified   using degenerate primers  A1s-n.F   (5&#39;TCCGCAAGTNGCVACBGTNGG3&#39;)  and A5-n.R   (5&#39;ACCATCGTCAGRTARGGRAAVA3&#39;)  and cycling   conditions previously  reported (Ni Chadhain <i>et al</i>.,   2006). PCR reactions were  prepared in 10 &mu;l volumes   containing 1 &times; PCR buffer,  0.8 mM each forward and   reverse primers, 1.5 mM MgCl2, 0.2  mM dNTPs, 0.025   U/ml Taq Polymerase  (Promega). Whole cell suspensions   in sterile distilled water  were used as source of   genomic DNA (1 &mu;l per reaction). Amplifications were   performed as follows: an  initial denaturalization step   of 94&deg;C for 5 min, followed  by 45 cycles of 94 &deg;C for   10 s, 54 &deg;C for 60 s, and 72  &deg;C for 60 s, and by a final extension of 72 &deg;C for 7  min.</p>     <p>In preliminary experiments,  fragments of the expected    size (~285 bp) were purified  from 1% agarose gels   (NucleoSpin Extract,  Macherey-Nagel) and sequenced   (Macrogen Inc., Seoul, South  Korea). The results obtained   validated the PCR protocol  described above.   Therefore, PCR products of  the expected size were considered to belong to  putative <i>merA </i>orthologs.</p>     <p><b><i>Plasmid  isolation</i></b></p>     <p>Some selected HgR isolates  were screened for the presence of plasmids as previously described by  Ball <i>et al</i>.  (2007).</p>     <p><b>Results</b></p>     <p><b><i>Chemical  analysis</i></b></p>     <p>  This indicated that, even  though several dozens processing   centers with their  respective, heavily-contaminated   tailing ponds are located in  the area surrounding   Colombia Mine, neither Hg  nor any other heavy metal   (except manganese) was  present at detectable concentrations   on groundwater collected at  both subsurface   levels (table 1). Calcium was found in  both levels. </p>     <p><b><i>Resistance to  mercury and others metals</i></b></p>     ]]></body>
<body><![CDATA[<p>The total number of  heterotrophic, cultivable bacteria    in each one of the two  levels monitored varied between   1.9-103CFU/ml (level IV) and  2.5-103CFU/ml   (level VI). Resistance to  HgCl2 (10mg/L), tested among   pure isolates, varied  between 83 to 90%, depending   on the level being monitored  (<a href="#tab1">Table 1</a>). Under these   conditions, control strains <i>B.  cereus </i>ATCC  14579 and  <i>P. stutzeri </i>OX1  were unable to grow at concentration   above 5mg/L of HgCl<sub>2</sub>, while  strains <i>B.  cereus </i>5 and <i>P.</i><i>stutzeri </i>OX grew  up to 80mg/L of HgCl<sub>2</sub>. On the other   hand, resistance to MeHg  (3mg/L) varied between 13.33% and 18.64% (<a href="#tab1">table 1</a>). Strikingly, nearly 6% of   isolates were resistant up  to 5mg/L of MeHg in the   deeper stratus. A total of  27 strains (90%) from level   IV and 49 strains (83.05%)  from level VI, resistant to at   least 10mg/L of HgCl<sub>2</sub>, were  isolated and purified from the primary cultures to be  further tested.</p>     <p align="center"><a name="tab1"></a><img src="img/revistas/biote/v16n2/v16n2a17tab1.jpg" width="560" height="240"></p>     <p>It is well known that  resistance values obtained by    growing strains in  Hg-supplemented agar media may   cause an overestimation of  this parameter. Thereby,   the values for MIC of Hg<sup>2+</sup> for  each strain were estimated   in liquid medium. The 76 Hg<sup>R</sup>  strains were   incubated in 1/3-strength LB  broth containing HgCl<sup>2</sup>  concentrations ranging from  2.72mg/L (10&mu;M Hg<sup>2+</sup>) to   21.8mg/L (80&mu;M Hg<sup>2+</sup>) of HgCl<sub>2</sub>.  59.25% of the isolates   tested from water samples  from level IV were resistant   to Hg<sup>2+</sup> 10&mu;M, while in level VI this value attained 100% (<a href="#tab2">table 2</a>).</p>     <p align="center"><a name="tab2"></a><img src="img/revistas/biote/v16n2/v16n2a17tab2.jpg"></p>     <p>When the combined results of  both levels are considered    it is clear that the great  majority of the strains   tested (85.52 %) were able  to grow in the presence of   Hg<sup>2+</sup> 10&mu;M; on the other hand, only 3 out of 76  strains   tested (3.94%) were  resistant to Hg<sup>2+</sup> 80&mu;M (<a href="#tab3">table 3</a>).   It was also demonstrated  that these strains showed resistance   to other heavy metals,  including Cu<sup>2+</sup>, Pb<sup>2+</sup>,   Ni<sup>2+</sup> and Zn<sup>2+</sup> (<a href="#tab4">table 4</a>). Strikingly, a great majority of   the isolates (between 76.31  and 100%) were able to   grow in the presence of 2 mM  of each one of the metals   tested, a concentration  which inhibited growth of the control strain of <i>E.  coli </i>(<a href="#tab4">table  4</a>).</p>     <p align="center"><a name="tab3"></a><img src="img/revistas/biote/v16n2/v16n2a17tab3.jpg" width="560" height="171"></p>     <p align="center"><a name="tab4"></a><img src="img/revistas/biote/v16n2/v16n2a17tab4.jpg" width="560" height="169"></p>     <p>As expected, the frequencies  of resistant isolates decreased    when increasing the  concentration of the toxic   element. A general tendency  can be also appreciated,   indicating that most  isolates were more susceptible,   under similar  concentrations, to Pb<sup>2+</sup> than Cu<sup>2+</sup> and   Ni<sup>2+</sup>, whereas Zn<sup>2+</sup> turned  out the least toxic among   the tested metals.</p>     <p><b><i>Antibiotic  resistance</i></b></p>     <p>All of the 76 HgR subsurface  isolates were screened    for resistance to 5  antibiotics through plating on selective   media. The highest frequency  of resistance was to   chloramphenicol (&gt;85 % of  the strains in both levels,<a href="#fig1"> figure. 1A</a>) and Amp (&gt; 70  % of the strains in both   levels). The antibiotic with  the highest efficacy was kanamycin,   with 62.96% and 44.89 % and  streptomycin   with 62.96 % and 53.06% of strains showing resistance   in levels IV and VI, respectively.   The two levels (IV and VI)  studied showed a high frequency   of isolates resistant to  more than one antibiotic   (<a href="#fig1">figure 1B</a>). In level VI,  26.53% of the strains were resistant   to, at least, five  antibiotics, while in level IV this value attained 40.74%.</p>     ]]></body>
<body><![CDATA[<p align="center"><a name="fig1"></a><img src="img/revistas/biote/v16n2/v16n2a17fig1.jpg" width="400" height="160"></p>     <p>Subsurface strains from each  one of the two levels exhibited    distinct antibiotic  resistance profiles. Nine distinct   profiles were detected among  27 Hg<sup>R</sup> strains  in   level IV while in level VI;  thirteen distinct profiles were detected among 49 HgR isolates  (<a href="#fig2">figure 2</a>).</p>     <p align="center"><a name="fig2"></a><img src="img/revistas/biote/v16n2/v16n2a17fig2.jpg" width="400" height="303"></p>     <p>Combined results of the two  strains groups shows that    76 HgR isolates  possess 15 distinct resistance profiles,   12 of which were found in  more than one strain (<a href="#fig2">figure 2</a>). Interestingly, 24  isolates (31.58%) showed the same profile of  multi-resistance (KCTSA).</p>     <p><b>Amplification of </b><b><i>merA </i></b><b>gene</b></p>     <p>In order to detect the presence  of the <i>merA </i>gene  encoding    the enzyme responsible for  Hg<sup>2+</sup> reduction,   PCR amplification experiments  using degenerate primers   were  performed.   A band corresponding to an internal  fragment of putative  <i>merA </i>orthologs was amplified from the genome   for 54 of the 76 isolates (71.05%,  <a href="#fig3">figure 3</a>). In level IV   this value reach 66.66% while in level  VI 73.47% of the isolates exhibited putative <i>merA </i>orthologs.</p>     <p align="center"><a name="fig3"></a><img src="img/revistas/biote/v16n2/v16n2a17fig3.jpg" width="400" height="343"></p>     <p>  <b><i>Plasmid  isolation</i></b></p>     <p>  With of the purpose to  establishing a possible transfer    of heavy metal- and  antibiotic-resistance genes   by conjugation, 20 Hg<sup>R</sup> strains  were screened for the   presence of large plasmids.  Results obtained confirm   that 11 isolates (55 %)  contained at least one plasmid;   62.9% of them showed plasmid  bands with apparent   sizes &gt;30kbp (<a href="#fig3">figure 3</a>).  In addition, previous studies in   vitro conjugation clearly  show the potential for conjugal   gene transfer in this  indigenous bacteria and this   transfer can occur between  phylogenetically distant   bacteria (unpublished data).</p>     <p><b><font size="3">Discussion</font></b></p>     ]]></body>
<body><![CDATA[<p>Little is known about the  impact for Hg contamination    of the microbial communities  colonizing the deep   subsurface in the El Callao  region. Results in this study   shown that resistance to Hg  and others heavy metals   is very frequent among  chemoheterotrophic bacteria   that colonize deep  subsurface in this region. This fact   may be considered as  indicative of a possible exposure   of the subsurface microbial communities to Hg, even   though chemical analysis of  the water do not detected   the presence of these heavy  metals including mercury.   Probably this metal exposure  occur through a process   of cross-contamination, via  filtration of water from rivers,   streams and tailings ponds  highly contaminated   during local rainy season  (Ball <i>et  al</i>.,  2007, G&oacute;mez <i>et</i> <i>al</i>.,  2013) (from September to February), which is accompanied   by major flooding and  overflowing of bodies   of surface waters polluted  (Garc&iacute;a-S&aacute;nchez <i>et al</i>.,   2008). Moreover, the absence  of detectable concentrations   of mercury can be due to the mineralogical   composition of the mine  (rich in carbonates, oxides   and silicate) (Paredes <i>et  al</i>.,  2007) and pH values (neutral   to basic) that may alter the  solubility of the metals   (Uchimiya <i>et  al</i>.,  2010; Woodruff <i>et al</i>., 2010) and   prevent detection by the  used technique. It can be argued,   however, constant flow  unpolluted water would   act as natural attenuation  events. This could be reflected   in the level of tolerance to  mercury of the bacterial   communities of groundwater.  The mercury tolerance   level of bacterial communities  from polluted surface   water is greater than in  subsurface communities. This   may be due to constant  exposure of these bacteria of   the surface to high mercury  concentrations (Ball <i>et al</i>.,   2007, G&oacute;mez <i>et  al</i>.,  2013), while the sporadic exposure   to mercury of subsurface  bacteria may lead to lower   tolerance to this metal.  This indicates that subsurface   communities pre exposed to  mercury could maintain   their mercury tolerance even  when the current exposure   is low. Also, this could indicate a high capacity for acclimation the subsurface  communities to mercury.</p>     <p>Additionally, it was found  that antibiotic resistance is    widespread among subsurface  bacteria, a high proportion   of isolates exhibited  multiple antibiotic resistance   (MAR; resistance to two or  more antibiotics)   in accordance with a  previous report (Brown <i>et al</i>.,   2009; Diptendu and Gouta, 2013;  Stepanauskas <i>et  al</i>.,   2006). Besides  Hg-resistance, the subsurface isolated   did also showed resistance to other heavy-metals (Cu,   Pb, Ni, Zn) and, several  antibiotics. These results are   very similar to the results  obtained in previous studies   in surface waters in the  region of El Callao (Ball <i>et al</i>.,   2007, G&oacute;mez <i>et  al</i>.,  2013). These results could support   the idea that microbial  exposure to a toxic substance   could result in indirect  selection for bacteria with resistance   to multiple toxic  substances, such as antibiotics   (Baker-Austin <i>et  al</i>.,  2006, Seiler and Berendonk, 2012;   Telmer <i>et  al</i>.,  2009). Thus, in other words, exposure to   toxic metals may select for  bacterial strains resistant   to antibiotics and <i>vice versa</i>.  Indeed, in a work, Stepanauskas  <i>et al. </i>(2006)  demonstrated that exposure of   freshwater environments to  either metals or antibiotics   selects for multiresistant  microorganisms. It is known   that genes conferring  resistance to heavy metal, anti biotic and other toxic compounds are often  genetically   linked and located on mobile  elements (i.e., conjugative   plasmids, transposons, and  integrons), some of   which are easily exchanged  among phylogenetically   distant bacteria (Summers,  2002; Davies and Davies,   2010; van Hoek <i>et  al</i>.,  2011). Therefore, microbial   exposure to mercury (even  for occasional contamination)   can co-select antibiotic  resistance and/or induce   the maintenance of resistance  genes in the absence   of the antibiotic selective  pressure. These co-selection   mechanisms include  coresistance, cross-resistance   and indirect but shared  regulatory responses to metal   and antibiotic exposure,  such as biofilm induction,   representing potential  co-selection mechanisms used   by prokaryotes (Baker-Austin <i>et  al</i>.,  2006, Seiler and   Berendonk, 2012). Resistance  to multiple antibiotics   in bacterial communities  studied in this work confirms   that this ability is common  and widespread among subsurface bacteria, with a  high proportion of isolates   exhibiting MAR.   The presence of  antibiotic-resistance genes in bacterial   communities from natural  environments, without   apparent selection pressure,  has been observed. Thus,   Bhullar <i>et  al</i>. (2012)  discovered an antibiotic-resistant   bacteria community in an  isolated cave 400 meters below   the Earth&#39;s surface. They  report that these bacteria were highly resistant to  antibiotics and, some strains   were resistant up to 14  different antibiotics. Similar results   were obtained with bacteria  isolated on natural environments in differents  glacier environments (Segawa  <i>et al</i>., 2013)  as Siberian permafrost (Mindlin <i>et</i><i>al</i>.,  2008) and the Arctic (Sudha <i>et al</i>., 2013).</p>     <p>Previous results can support  the notion that organisms    on natural environments are  a reservoir of resistance genes and that antibiotic  resistance is a natural and dominant component in ancient  microbial pangenomes with a long evolutionary  past (Bhullar <i>et al</i>. 2012). The antibiotic resistance and  its occurrence in these subsurface bacterial communities could  be due to others reasons.  Antibiotic-resistance genes could play different roles in natural  environments just like the one studied. i.e., these could have a  protective role either in the producer organisms or in  some of their coexisting organisms (Laskaris <i>et  al</i>.,  2010) while some of them could play an important role  in the biosynthesis of antibiotics (Allen <i>et  al</i>.,  2010) and other could be involved in metabolic and signaling  of bacterial processes occurring in natural ecosystems  (Laskaris <i>et  al</i>.,  2010) and some others could cooperate  in the degradation and use of antibiotics as food  (Davies and Davies, 2010). Owing the environmental  conditions of the mine (i.e., low nutrient availability)  it is likely that competition for resources can play an  important role in the persistence of these bacteria. This  competition can be developed through various adaptations such as production of antibiotic to compete with their  nutritional antagonists, acquisition and development  of defense mechanisms to enable them growth in the  presence of noxious compounds, changes in cell  and growth physiology (Bhullar <i>et  al</i>.,  2012). Hence, it might be thought that antibiotic resistance in  these isolates of groundwater is anterior to the emergence of  antibiotic. Information on current mechanisms for horizontal gene transfer (HGT) in  depth subsurface environments is scarce. Considering the  characteristics of this environment (e.g. low density of  microbes) is difficult to imagine how it can occur  there. The high frequency of plasmids in HgR strains  could indicate that elevated levels of metal- and  antibiotic-resistance are related to carrying of resistance  genes by these plasmids. In studies have observed the  plasmid presence and the occurrence of HGT in  communities from subsurface environment (although this  may occur at a low frequency) (Coombs 2009;  Hemme <i>et  al. </i>2010). HGT in these communities would  play an important role in their gene evolution, which  have permitted them survival in hostile environments.</p>     <p>The presence of putative <i>merA </i>orthologs  in a high proportion    (71.5%) of the bacterial  isolates analyzed in   the present work seem to  indicate that bacterial detoxification   of mercury proceed via the classical pathway   involving ionic-mercury  reduction by a mercuric reductase.   For the remaining 28.5% of  the strains, the resistance   seems to be not due to  enzymatic volatilization   of mercury, another possible  mechanism of resistance   that could be involved. Some  bacteria possess proteins   in their plasmatic membranes  which alter the mercury   permeability inhibit mercury  uptake (or binding)   by the cells (Pan-Hou <i>et  al</i>.,  1981). Plasmid-encoded   efflux systems have also  been suggested as alternative systems to mercury resistance  (Reyes <i>et  al</i>.,  1999).</p>     <p><b><font size="3">Conclusions</font></b></p>     <p>Bacterial communities found  in groundwater from    the subsurface mine &quot;Colombia&quot;,  located on the auriferous   reservoirs of El Callao,  Venezuela, presented   a significant frequency of  mercury-resistant strains, to   both inorganic (HgCl) and  organic (MeHg) markers, at   the two levels of depth  explored (-288 m and -388m   below the mine entrance and  -22m and -78m below the sea level,  respectively).</p>     <p>Likewise, it can be  ascertained that strains carrying    Hg<sup>R</sup> genes also exhibited  resistance to antibiotics and   other heavy metals, which  may be an indication that    heavy metals resistance  could assist the co selection   of antibiotics-resistance  genes. However, it is important   to consider that observation  of antibiotic-resistant   microorganisms in natural  environments free of pollutants   has become ever more common,  suggesting a   origin natural and more  ancient of these genes. The   presence of low and high  molecular weight plasmids   of conjugative type in these  bacteria, as envisioned in   the preliminary studies carried out, could suggest the occurrence of HGT processes in these  communities,   allowing a more widespread  dissemination of these genes.</p>     <p>The presence of putative  orthologs <i>merA </i>in a  high   proportion of bacterial  isolates analyzed indicate that   detoxification of bacterial  mercury proceed via the   classical pathway involving  ionic mercury-reduction by   a mercuric reductase.  However, in other isolates the   resistance appears to be due  to another mechanism of resistance that may be  involved.</p>     <p><b>Acknowledgements</b></p>     <p>We are indebted to Dr. Tamar  Barkay (Department of   Biochemistry and  Microbiology at Rutgers University,   New Brunswick, NJ) for  kindly providing the HgR and   HgS reference strains used in  this study. We are also   grateful to Dr. Pablo Carrero (Facultad de Ciencias,   Universidad de Los Andes. Venezuela) for performing   chemical analysis of water  samples (Hg<sup>2+</sup> and  Me-Hg   determination) and Dr. Wilfredo Qui&ntilde;ones (Facultad   de Ciencias, Universidad de Los Andes, Venezuela)   and Dr Crist&oacute;bal L&aacute;rez  Vel&aacute;squez for his critical revision   of this work. We thank  CVG-Minerven C.A. for   logistic support in El  Callao. This work was financed   partially by CDCHTULA  (project  number C-1428-06- 03-B).</p>     ]]></body>
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