<?xml version="1.0" encoding="ISO-8859-1"?><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<front>
<journal-meta>
<journal-id>0122-5383</journal-id>
<journal-title><![CDATA[CT&F - Ciencia, Tecnología y Futuro]]></journal-title>
<abbrev-journal-title><![CDATA[C.T.F Cienc. Tecnol. Futuro]]></abbrev-journal-title>
<issn>0122-5383</issn>
<publisher>
<publisher-name><![CDATA[Instituto Colombiano del Petróleo (ICP) - ECOPETROL S.A.]]></publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id>S0122-53832003000100005</article-id>
<title-group>
<article-title xml:lang="en"><![CDATA[BIODESULFURIZATION PROCESS EVALUATION WITH A Gordona rubropertinctus STRAIN]]></article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Acero]]></surname>
<given-names><![CDATA[Julia]]></given-names>
</name>
<xref ref-type="aff" rid="A01"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Berdugo]]></surname>
<given-names><![CDATA[Claudia]]></given-names>
</name>
<xref ref-type="aff" rid="A01"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Mogollón]]></surname>
<given-names><![CDATA[Leonardo]]></given-names>
</name>
<xref ref-type="aff" rid="A01"/>
</contrib>
</contrib-group>
<aff id="A01">
<institution><![CDATA[,Ecopetrol S.A. - Instituto Colombiano del Petróleo  ]]></institution>
<addr-line><![CDATA[Bucaramanga Santander]]></addr-line>
<country>Colombia</country>
</aff>
<pub-date pub-type="pub">
<day>01</day>
<month>12</month>
<year>2003</year>
</pub-date>
<pub-date pub-type="epub">
<day>01</day>
<month>12</month>
<year>2003</year>
</pub-date>
<volume>2</volume>
<numero>4</numero>
<fpage>43</fpage>
<lpage>54</lpage>
<copyright-statement/>
<copyright-year/>
<self-uri xlink:href="http://www.scielo.org.co/scielo.php?script=sci_arttext&amp;pid=S0122-53832003000100005&amp;lng=en&amp;nrm=iso"></self-uri><self-uri xlink:href="http://www.scielo.org.co/scielo.php?script=sci_abstract&amp;pid=S0122-53832003000100005&amp;lng=en&amp;nrm=iso"></self-uri><self-uri xlink:href="http://www.scielo.org.co/scielo.php?script=sci_pdf&amp;pid=S0122-53832003000100005&amp;lng=en&amp;nrm=iso"></self-uri><abstract abstract-type="short" xml:lang="en"><p><![CDATA[Direct combustion of fossil fuels produce sulfur oxides which are the main source of acid rain; therefore, most countries worldwide are regulating its release into the environment. As a consequence, several processes have been developed over the past years for desulfurization of crude oil and distillates. Due to its specificity, biodesulfurization is an interesting alternative for the transformation and upgrading of refined products, acting as a complement to traditional refining processes. This work presents an overview of Ecopetrol - Instituto Colombiano del Petróleo (ICP) efforts to develop a Biodesulfurization process, based on the activity of a native strain of Gordona rubropertinctus ICP172. Technical improvements on the isolation and characterization of desulfurizing microorganisms, the potential of developing new biocatalysts by means of directed evolution techniques, as well as the experience achieved during production of the biocatalyst in large-scale fermentation processes are hereby presented. The results of biodesulfurization reactions in conventional reactors and in a new membrane bioreactor prototype are also included. Finally, technological challenges faced by biodesulfurization processes are also discussed.]]></p></abstract>
<abstract abstract-type="short" xml:lang="es"><p><![CDATA[Los óxidos de azufre producto de la combustión directa de los combustibles fósiles son la principal fuente de lluvia ácida por lo cual la mayoría de países a nivel mundial regulan su liberación al medio ambiente. Como consecuencia, en los últimos años se han desarrollado diversos procesos para la remoción de azufre a partir del crudo y sus derivados. La biodesulfurización, por su alta especificidad se presenta como una alternativa prometedora en la transformación y valorización de productos refinados, como tecnología complementaria a las prácticas de refinación tradicionales. Este trabajo resume los esfuerzos realizados en Ecopetrol - Instituto Colombiano del Petróleo (ICP) en el desarrollo de un proceso de Biodesulfurización con una cepa nativa de Gordona rubropertinctus ICP172. Se presentan los avances técnicos obtenidos en el aislamiento y caracterización de los microorganismos desulfurizadores, el potencial de desarrollo de nuevos biocatalizadores por técnicas de evolución dirigida así como la experiencia obtenida en la producción del biocatalizador en fermentaciones a gran escala. Así mismo se presentan los resultados obtenidos en reacciones de desulfurización en reactores convencionales y en un nuevo prototipo de reactor de membrana. Finalmente se discuten los retos tecnológicos que un proceso de Biodesulfurización tendrá que enfrentar para lograr su aplicación a escala industrial.]]></p></abstract>
<abstract abstract-type="short" xml:lang="pt"><p><![CDATA[Os óxidos de enxofre produto da combustão direta dos combustíveis fósseis são a principal fonte de chuva ácida pelo qual à maioria de países a nível mundial regulam a sua liberação ao meio ambiente. Como consequência, nos últimos anos tem se desenvolvido diversos processos para a remoção de enxofre a partir do cru e seus derivados. A biodesulfurização, pela sua alta especificidade apresentase como uma alternativa prometedora na transformação e valorização de produtos refinados, como tecnologia complementar às práticas de refinação tradicionais. Este trabalho resume os esforços realizados na Ecopetrol - Instituto Colombiano do Petróleo (ICP) no desenvolvimento de um processo de Biodesulfurização com uma cepa nativa de Gordona rubropertinctus ICP172. Apresentam-se os avanços técnicos obtidos no isolamento e caracterização dos microorganismos desulfurizadores, o potencial de desenvolvimento de novos biocatalizadores por técnicas de evolução dirigida assim como a experiência obtida na produção do biocatalizador em fermentações a grande escala. Da mesma forma apresentamse os resultados obtidos em reações de desulfurização em reatores convencionais e em um novo protótipo de reator de membrana. Finalmente se discutem os retos tecnológicos que um processo de Biodesulfurização terá que enfrentar para conseguir a sua aplicação à escala industrial.]]></p></abstract>
<kwd-group>
<kwd lng="en"><![CDATA[biodesulfurization]]></kwd>
<kwd lng="en"><![CDATA[non-aqueous biocatalysis]]></kwd>
<kwd lng="en"><![CDATA[sulfur]]></kwd>
<kwd lng="en"><![CDATA[SOx]]></kwd>
<kwd lng="es"><![CDATA[biodesulfurización,]]></kwd>
<kwd lng="es"><![CDATA[biocatálisis anhídra,]]></kwd>
<kwd lng="es"><![CDATA[azufre,]]></kwd>
<kwd lng="es"><![CDATA[SOx.]]></kwd>
</kwd-group>
</article-meta>
</front><body><![CDATA[  <font face="Verdana" size="2"> <font size="4">    <p align="center"><b>BIODESULFURIZATION     PROCESS EVALUATION WITH A <i>Gordona rubropertinctus</i> STRAIN</b></p></font> <font size="2">    <p align=center><b>Julia Acero*,   Claudia Berdugo   and Leonardo Mogoll&oacute;n</b></p>     <p align=center>Ecopetrol S.A. - Instituto Colombiano del   Petr&oacute;leo, A.A. 4185  Bucaramanga,    Santander,  Colombia </p>     <p align=center>e-mail: <a href="mailto:jacero@ecopetrol.com.co">jacero@ecopetrol.com.co</a></p>     <p align=center><i>(Received 30 May 2003; Accepted   18 November 2003)</i></p>       <p align=center><i>*To whom correspondence may be addressed</i></p> </font>   <hr>     <p><b>ABSTRACT</b></p>     <p>Direct combustion of fossil   fuels produce sulfur oxides which are the main source of acid rain; therefore, most   countries worldwide are regulating its release into the environment. As a   consequence, several processes have been developed over the past years for   desulfurization of crude oil and distillates. Due to its specificity,   biodesulfurization is an interesting alternative for the transformation and   upgrading of refined products, acting as a complement to traditional refining   processes. This work presents an overview of Ecopetrol - Instituto Colombiano   del Petr&oacute;leo (ICP) efforts to develop a Biodesulfurization process, based on   the activity of a native strain of Gordona rubropertinctus ICP172. Technical   improvements on the isolation and characterization of desulfurizing   microorganisms, the potential of developing new biocatalysts by means of   directed evolution techniques, as well as the experience achieved during   production of the biocatalyst in large-scale fermentation processes are hereby   presented. The results of biodesulfurization reactions in conventional reactors   and in a new membrane bioreactor prototype are also included. Finally,   technological challenges faced by biodesulfurization processes are also   discussed.</p>     <p><b>Keywords:</b> biodesulfurization,   non-aqueous   biocatalysis, sulfur, SOx.</p>   <hr>     ]]></body>
<body><![CDATA[<p><b>RESUMEN</b></p>     <p>Los &oacute;xidos de azufre producto de   la combusti&oacute;n directa de los combustibles f&oacute;siles son la principal fuente de   lluvia &aacute;cida por lo cual la mayor&iacute;a de pa&iacute;ses a nivel mundial regulan su   liberaci&oacute;n al medio ambiente. Como consecuencia, en los &uacute;ltimos a&ntilde;os se han   desarrollado diversos procesos para la remoci&oacute;n de azufre a partir del crudo y   sus derivados. La biodesulfurizaci&oacute;n, por su alta especificidad se presenta   como una alternativa prometedora en la transformaci&oacute;n y valorizaci&oacute;n de   productos refinados, como tecnolog&iacute;a complementaria a las pr&aacute;cticas de   refinaci&oacute;n tradicionales. Este trabajo resume los esfuerzos realizados en   Ecopetrol - Instituto Colombiano del Petr&oacute;leo (ICP) en el desarrollo de un   proceso de Biodesulfurizaci&oacute;n con una cepa nativa de Gordona rubropertinctus   ICP172. Se presentan los avances t&eacute;cnicos obtenidos en el aislamiento y   caracterizaci&oacute;n de los microorganismos desulfurizadores, el potencial de   desarrollo de nuevos biocatalizadores por t&eacute;cnicas de evoluci&oacute;n dirigida as&iacute;   como la experiencia obtenida en la producci&oacute;n del biocatalizador en   fermentaciones a gran escala. As&iacute; mismo se presentan los resultados obtenidos   en reacciones de desulfurizaci&oacute;n en reactores convencionales y en un nuevo   prototipo de reactor de membrana. Finalmente se discuten los retos tecnol&oacute;gicos   que un proceso de Biodesulfurizaci&oacute;n tendr&aacute; que enfrentar para lograr su   aplicaci&oacute;n a escala industrial.</p>     <p><b>Palabras   claves:</b> biodesulfurizaci&oacute;n, biocat&aacute;lisis anh&iacute;dra, azufre, SOx.</p>   <hr>     <p><b>RESUMEN</b></p>     <p>[abstract language=pt]Os &oacute;xidos de   enxofre produto da combust&atilde;o direta dos combust&iacute;veis f&oacute;sseis s&atilde;o a principal   fonte de chuva &aacute;cida pelo qual &agrave; maioria de pa&iacute;ses a n&iacute;vel mundial regulam a   sua libera&ccedil;&atilde;o ao meio ambiente. Como consequ&ecirc;ncia, nos &uacute;ltimos anos tem se   desenvolvido diversos processos para a remo&ccedil;&atilde;o de enxofre a partir do cru e   seus derivados. A biodesulfuriza&ccedil;&atilde;o, pela sua alta especificidade apresentase   como uma alternativa prometedora na transforma&ccedil;&atilde;o e valoriza&ccedil;&atilde;o de produtos   refinados, como tecnologia complementar &agrave;s pr&aacute;ticas de refina&ccedil;&atilde;o tradicionais.   Este trabalho resume os esfor&ccedil;os realizados na Ecopetrol - Instituto Colombiano   do Petr&oacute;leo (ICP) no desenvolvimento de um processo de Biodesulfuriza&ccedil;&atilde;o com   uma cepa nativa de <i>Gordona     rubropertinctus</i> ICP172. Apresentam-se os avan&ccedil;os t&eacute;cnicos obtidos   no isolamento e caracteriza&ccedil;&atilde;o dos microorganismos desulfurizadores, o   potencial de desenvolvimento de novos biocatalizadores por t&eacute;cnicas de evolu&ccedil;&atilde;o   dirigida assim como a experi&ecirc;ncia obtida na produ&ccedil;&atilde;o do biocatalizador em   fermenta&ccedil;&otilde;es a grande escala. Da mesma forma apresentamse os resultados obtidos   em rea&ccedil;&otilde;es de desulfuriza&ccedil;&atilde;o em reatores convencionais e em um novo prot&oacute;tipo   de reator de membrana. Finalmente se discutem os retos tecnol&oacute;gicos que um   processo de Biodesulfuriza&ccedil;&atilde;o ter&aacute; que enfrentar para conseguir a sua aplica&ccedil;&atilde;o   &agrave; escala industrial.</p> <hr>     <p><b>INTRODUCTION</b></p>     <p>As a whole, industrial   development has been accompained by the environments&rsquo; deterioration, of which   its primary manifestations are global warming, acid rain and destruction of the   ozone layer. In their efforts to protect the environment and to guarantee the   welfare of future generations, governments have implemented legislations   intended to regulate atmospheric emissions, liquid disposals, and solid waste   products generated by industrial activities. The Oil industry has not been the   exception being subject to laws intended to diminish atmospheric emissions   generated by hydrocarbons combustion, mainly, carbon dioxide (involved in   global warming or greenhouse effect), and nitrogen (NOx) and sulfur (SOx) oxides   implied in the acid rain phenomenon. As a result, the United States   Environmental Protection Agency- EPA and other regulatory agencies worldwide   have limited the amount of sulfur dioxide released into the air and,   consequently, the content of sulfur in fuels, especially diesel oil and   gasoline. In Colombia, the Ministry of the Environment, through Resolution 0068   issued in January 18, 2001, set forth the new quality standards for fuels in   terms of maximum organic sulfur concentrations allowed (<a href="#tb1">Table 1</a>).</p>     <p align="center"><img src="img/revistas/ctyf/v2n4/v2n4a5i1.jpg"><a name="tb1"></a></p>     <p>Conventional processes of sulfur   removal such as hydro-treatment exhibit important technical and economical   problems to achieve the sulfur levels required by international treaties. This   technology makes intensive use of energy since transformations occur at high   temperature and pressure conditions, and operating costs grow geometrically   when trying to reduce very low sulfur concentrations (less than 500 ppm).   Nevertheless, hydrodesulfurization (HDS) has made substantial progress for the   last years with the development of new catalysts and with the development of a   process that can reach drastic standards (10 ppm of sulfur) in a near future.   On the other hand, non-conventional technologies such as chemical oxidation   (Levy <i>et al</i>., 2001), selective adsorption of sulfurated compounds (www.szorb.com/szorb_processover.htm),   or biodesulfurization (Monticello, 2000; Ohshiro and Izumi, 1999), are   alternatives under development for the production of diesel oil and gasoline   with low sulfur contents (Fredrick, 2002).</p>     <p>Microbial desulfurization or   biodesulfurization is described as the process by which the use of a catalyst   of biological nature enables the removal of sulfur content in oil fractions at   moderate pressure and temperature conditions. Given its specificity, it is   presented as a promising alternative for the removal of organic-sulfured   molecules resistant to conventional technologies, such as dibenzothiophenes and   their substituted forms (Monticello, 1998). Development of a biodesulfurization   process includes the isolation and production of the biocatalyst (microorganism   or enzyme), the desulfurization reaction (non-aqueous biocatalysis), and   finally, the separation of products and quality controls. Most recent papers in   this area describe significant efforts intended to isolate new desulfurizing   microorganisms as well as the genetic improvement of such microorganisms. In   the same way, significant advances are observed worldwide in terms of   biocatalysis in the organic or anhydrous phase and in the field of   bioengineering as a whole, where concepts of metabolic engineering (biocatalyst   design), construction of new bioreactors and development of sophisticated   separation systems are combined. (Vazquez-Duhalt <i>et al</i>., 2002; Boron <i>et     al</i>., 1999).</p>     ]]></body>
<body><![CDATA[<p>Different desulfurizing   microorganisms have been isolated and characterized worldwide, including   Rhodococcus erythropolis IGTS 8 (Kilbane and Bielaga, 1990), Rhodococcus   erythropolis D-1 (Izumi <i>et al</i>., 1994), Rhodococcus erythropolis I-19   (Folsom <i>et al</i>., 1999), and Rhodococcus sp strain WU-K2R (Kirimura <i>et al</i>.,   2002). These microorganisms transform Dibenzothiophene (DBT) into   2-hydroxybiphenyl (2-HBP), which remains in the organic phase while the sulfur   is eliminated in the form of inorganic sulfate in the aqueous phase of the   system. Out of these strains, Rhodococcus erythropolis IGTS 8, as isolated and   patented by Enchira Biotechnology Corporation (formerly Energy Biosystem   Corporation), has been studied in detail; its metabolic route has been   established through the identification of the enzymes and genes responsible for   its desulfurizing activity (Gray <i>et al</i>., 1996; Piddington <i>et al</i>.,   1995; Denome <i>et al</i>., 1994)(Figure 1). More recently highlight should be   made on the isolation and characterization of thermophile strains such as   Paenibacillus sp., capable of desulfurizing benzo- and dibenzothiophenes   present in diesel oil (Konishi, J., 2000; Yoshitaka <i>et al</i>., 2000), as   well as the development of several evolution techniques aimed at modifying and   obtaining enzymes with new and/or improved characteristics (Arnold <i>et al</i>.,   2001).</p>     <p align="center"><img src="img/revistas/ctyf/v2n4/v2n4a5i2.jpg"><a name="fig1"></a></p>     <p>In the fields of biocatalysis   in organic phase and bioengineering, important progress has been made with the   design of new bioreactors. Proposals include the use of electro spray type   reactors (Kaufman <i>et al</i>., 1997) or membrane reactors, which favor the   contact between the organic and aqueous phases (Berdugo <i>et al</i>., 2002,   Setti <i>et al</i>., 1999 ) and biphasic reactors with and without the reuse of   biomass through immobilization of microorganisms.</p>     <p>The purpose of this paper is to   present the most relevant achievements in the development of a   Biodesulfurization technology at Ecopetrol - Instituto Colombiano del Petr&oacute;leo   through the evaluation of strain Gordona rubropertinctus ICP172. Technical   advances in the isolation, characterization and genetic improvement of   biocatalysts, as well as the experience acquired in organic phase biocatalysis   are effectively displayed. Finally, the technological challenges that this   technology has to overcome in the upcoming decades in order to be successfully   applied at industrial levels, are brought up.</p>     <p><b>METHODOLOGY</b></p>     <p><b>Biocatalysts and   culture-related conditions</b></p>     <p>Microorganisms and plasmids   used in this study are shown in <a href="#tb2">Table 2</a>. Desulfurizing strain where grown at   305 K in basal salt medium ICP4, containing (g/l): Glucose 12,4; Na2HPO4 3,74;   KH2PO4 1,68; NH4Cl 2,84; MgCl2. 6H2O 0,146; FeCl3. 6H2O 0,02; CaCl2.2H2O 0,112;   dimethylsulfoxide (DMSO) 0,02. The E. coli transforming strains were grown in   LB medium supplemented with ampicillin (100 &mu;g/ml), at 310 K. Fed batch culture   conditions were published in Berdugo <i>et al</i>. (2001). The dszC gene used   in the directed evolution trials was amplified and cloned from strain ICP172.   dszC mutants were obtained via Error-prone PCR (EP-PCR) technique as described   in Acero (2002).</p>     <p align="center"><img src="img/revistas/ctyf/v2n4/v2n4a5i3.jpg"><a name="tb2"></a></p>     <p><b>Fed batch culture</b></p>     <p>To increase the amount of   biocatalyst for the desulfurization reactions, several fed batch cultures with   constant and exponential flow, were grown in a New Brunswick Bioflo 3000   reactor. The fermentor has temperature, dissolved oxygen and air flow control.   Cultures were grown in ICP4 medium, which contains glucose as carbon source and   DMSO as sulfur source. Culture conditions and operational conditions are   presented in detail in Berdugo <i>et al</i>. (2001).</p>     ]]></body>
<body><![CDATA[<p><b>Biodesulfurization reactions</b></p>     <p>Once the biomass is obtained   through the aforementioned procedures, biomass activity is verified via the   production of 2-HBP metabolite. Desulfurization reactions are carried out   through a &quot;resting cells&quot; procedure, using 20 g/l of biomass (respect to the   total volume) and 25% organic phase. Reactions were carried out with a model   compound (DBT in hexadecane) and Diesel oil emulsions in 0,2 liters, 1 liter,   and 5 liters reactors, respectively. Detailed procedure is described in Berdugo <i>et al</i>. (2001). The membrane bioreactor is composed of a carcass and a   membrane, arranged as two concentric tubes. The carcass was made in 1/2 inch   diameter tubing with two ports, used for fluid input and output. The membrane   ends are isolated from the carcass in such a way that the fluid from the   carcass only passes to the membrane if it moistens the teflon membrane.   Additional data is recorded in Berdugo <i>et al</i>. (2002).</p>     <p><b>Analytical methods</b></p>     <p>Total sulfur was determined by gas   chromatography with photometric flame detector. Dimetilsulfoxide (DMSO) was   determined by HPLC (High performance liquid chromatography). Dibenzothiophene   (DBT), Benzothiophene (BHT) and 2-hidroxibiphenyl (2-HBP) were monitored by gas   chromatography with ionizing flame detector (GC/FiD). DBT, BHT and 2-HBP were   obtained from Aldrich Chemicals. All other reagents were analytical grade.</p>     <p>Secondary metabolites analysis   was carried out through solid phase microextraction technique. Analyses were   carried out by gas chromatography with flame photometric detector (HRGC/FDP)   and mass selective detector (HRGC/MSD). Standardization of the technique   comprised the evaluation of parameters such as temperature, pH, salt   concentration, and the stationary phase type (Polydimethylsiloxane/divinylbencene   - 65 &mu;m and polyacrylate - 85 &mu;m). The metabolite extraction and quantification   procedure is reported in Puerta and Staschenko (2000). The Chromatograph used   for GC-MSD was HP-5890 Series II (Hewlett-Packard, Palo Alto, Ca., USA),   connected to a selective mass detector (HP-5972); and for HRGC/FPD, a HP-5890   model (Hewlett-Packard, Palo Alto, Ca., USA).</p>     <p><b>RESULTS AND DISCUSSION</b></p>     <p>In Colombia, Ecopetrol -   Instituto Colombiano del Petr&oacute;leo had the opportunity to evaluate the potential   of a Biodesulfurization process as an innovative and complementary technology   for the reduction of the organic sulfur levels present in diesel oil. The   development of the process included a first stage for the isolation and   characterization of a suitable biocatalyst; that is, the selection of   desulfurizing microorganisms and the development of new and improved   biocatalysts by genetic improvement of some enzymes. A second stage included   the production of high cell density cultures of the biocatalyst and the   assessment of its efficiency in desulfurization reactions. Technical advances   of each stage are shown below.</p>     <p><b>Isolation and development of   suitable biocatalysts</b></p>     <p>Initially, 60 native strains were   isolated from natural sources and oil residues by means of enrichment culture   and direct isolation techniques (Madero <i>et al</i>., 1998). Strains were   subjected to specific selective tests in synthetic solutions (Didenzothiophene   in ethanol, Dibenzothiophene in hexadecane) and real matrixes (diesel oil and   kerosene). Of these, strain ICP172 showed the capacity to assimilate and use   sulfur contained in Dibenzotiophene (DBT) and in diesel oil, as the only   growing sulfur source. The strain was characterized at a biochemical and   molecular level to identify the metabolic route and enzymes used by the   microorganism for the transformation of DBT. Biochemical identification of the   microorganism using MicrostationTM BIOLOG system version 3,5, revealed a   Gordona rubropertinctus strain with a similarity percentage of 0,942. Molecular   characterization of strain ICP172 included the identification and further   cloning of the desulfurizing genes dszA, dszB and dszC using strain IGTS8 genes   as a probe.</p>     <p>Since biocatalytic activity of   the strain may be genetically improved, a directed evolution experiment was   designed for the improvement of the Dibenzothiophene monooxygenase enzyme   (DszC), which is responsible for the initial oxidation of the sulfur compounds.   dszC gene mutants were obtained by Error-Prone PCR (EP-PCR), a directed   evolution technique previously standardized and evaluated in our Laboratory for   the development of hydrophobic and thermo-tolerant Chloroperoxidase enzymes   (Acero and Mogoll&oacute;n, 2002). dszC gene from strain Gordona rubropertinctus   ICP172 was cloned and amplified in EP-PCR reactions. Mutated genes (1,3 kb)   were further purified and cloned in vector pGEMEX-2 for transformation in   competent E. coli cells. Strains ICP343 through ICP363 were selected for the evaluation   and expression of DszC monooxygenases. Strain ICP 345 reacted to the induction   with IPTG with the production of a fusion protein of approximately 65 kDa   (<a href="#fig2">Figure 2</a>). Fusion protein was solubilized, partially purified and evaluated   for its capacity to oxidize indol into indigo as a preliminary test for   monooxygenase activity. Positive clones may be expressed in a Gordona   rubropertinctus dszC (-)strain, and their activities compared with native DszC   enzyme. An efficient biodesulfurization process could include a pre-oxidation   stage with improved DszC enzymes complemented with a liquid/liquid extraction   step or the removal of oxidized compounds during Catalytic Cracking.</p>     ]]></body>
<body><![CDATA[<p align="center"><img src="img/revistas/ctyf/v2n4/v2n4a5i4.jpg"><a name="fig2"></a></p>     <p><b>Metabolic route   identification of strain ICP172</b></p>     <p>To confirm the metabolic route   followed by Gordona rubropertinctus ICP172 strain in the biodesulfurization   process, an identification of intermediate metabolites was performed through   solid phase microextraction technique (Janusz, 1997). Assessments carried out   through gas chromatography with photometric flame detector and mass selective   detector, enabled the identification and quantification of sulfured   metabolites: Dibenzothiophene (DBT), N-butyl-bencenesulfonamide,   dibenzo&#91;c,e&#93;&#91;1,2&#93;oxatiine 6-oxide   (Sultine), DBT-sulfone, and three more unidentified intermediate compounds   (Puerta and Staschenko, 2000). <a href="#fig3">Figure 3</a> shows the transformation kinetics of   Dibenzothiophene by strain ICP172, and the chromatograms with the   identification of the intermediate metabolites. Identification of these sulfur   compounds allowed confirming that strain ICP172 follows the 4S or non-destructive   desulfurizing route, as suggested before.</p>     <p align="center"><img src="img/revistas/ctyf/v2n4/v2n4a5i5.jpg"><a name="fig3"></a></p>     <p><b>Production of the   biocatalyst</b></p>     <p>For a large-scale production of   the biocatalyst, two fed batch-culture strategies were evaluated: fed batch   culture at constant rate and fed batch culture at exponential rate. Trials were   carried out with Rhodococcus erythropolis IGTS8 strain as a standard strain,   and with the native Gordona rubropertinctus ICP172 strain. For the development   of fed batch cultures, flux profiles by automated feeding systems were   established (Berdugo <i>et al</i>., 2001). Fed batch cultures at constant flux   for strain IGTS8 drove an increase in cellular concentration, reaching a density   of 4,5 g/l of biomass. This concentration is 1,5 times higher than the achieved   in batch cultures and features the same order of magnitude reached by Wang and   Krawieck (1996), who used a culture strategy similar to the one reported   herein. However, a limitation by substrate or inhibition by byproducts was   observed, which prevented the development of higher cellular concentrations.</p>     <p>In the fed batch culture,   exponential flux, the dilution rate remains constant; therefore, a dilution   rate equivalent to the maximum culture growth speed was fixed. (Berdugo <i>et     al</i>., 2001). Figure 4A shows the kinetic behavior of the fed batch   culture-exponential flux of strain IGTS8. Under these conditions, it is   possible to increase the cellular concentration up to 7,5 g/l, which is three   times that of batch culture, and 1,7 times that reported by Wang and Krawiec   (1996). On the other hand, the kinetic behavior of the fed batch culture-   exponential flow of native strain ICP172 is shown in Figure 4B. Initially   in-batch stage, the microorganisms growth rate was 0,0015 h-1; therefore, the   dilution rate corresponded to this same value. Afterwards, this value was   recalculated, considering the low cellular growth during these first hours. The   system was then operated with a dilution rate of D=0,01 h-1, until reaching a   total volume of 12 litres. Under these conditions, it was possible to increase   the cellular concentration up to 12,5 g/l. This value is close to the one   obtained by Folsom <i>et al</i>. (1999) with strain IGTS8. This results are satisfactory   considering that only a few groups have developed a high density culture   strategy with desulfurizing strains. Honda <i>et al</i>. (1998) developed a   high density culture strategy with strain IGTS-8 obtaining cellular   concentrations of 30 g/l in a fed-batch culture.</p>     <p align="center"><img src="img/revistas/ctyf/v2n4/v2n4a5i6.jpg"><a name="fig4"></a></p>     <p>In all cases of biocatalyst   production, the biomass obtained was catalytically active in the   biodesulfurization trials performed with DBT/HXD matrix and in-diesel. A   positive criterion was the detection of the final metabolite, 2-hidroxybiphenyl   (2-HBP) by chromatography (data not shown).</p>     <p><b>Development of a membrane   reactor prototype</b></p>     ]]></body>
<body><![CDATA[<p>Reactors traditionally used in   biosulfurization processes (stirred tanks) present several limiting aspects for   its application at an industrial level, these reactors feature organic   phase/watery phase volumetric ratios that do not exceed the 50% mark, to avoid   microbial inhibition and formation of stable water-oil emulsions. Thus giving   importance to the design of new bioreactors. Among the non-conventional   reactors that have been used at industry levels, membrane reactors have   attracted considerable interest due to its possibility of integrating the   biocatalytic and the separation processes in-one. Membrane bioreactors combine   selective mass transportation featuring chemical reactions with the selective   removal of inhibitory products from the process, thus increasing reaction   conversion (Giorno and Drioli, 2000). Through this system it is possible to   immobilize cells or enzymes, and to simultaneously reach bioconversion, product   separation and enrichment in the same operating unit (Belfort, 1989 quoted in   Cass <i>et al</i>., 2000).</p>     <p>Due to the aforementioned, a   membrane bioreactor prototype was designed, built and further assessed during   biodesulfurization processes. The system was also used as a separation   mechanism for the emulsion developed during the biocatalytic reaction. The   reactor operates as a tube and carcass-type interchanger, where it is possible   to separate the organic phase, using hydrophobic membranes on the tubing   coating through which the emulsion is loaded into the carcass; the organic   phase is recovered through the lumen. Two sets of experiments where carried   out. In the first one, the emulsion separation was evaluated at different   cellular concentrations, keeping the organic/aqueous phase relation of 25/75.   In the second set of trial, the separation of phases at different   organic/aqueous ratios (60/40, 50/50, 40/60 y 25/75) was evaluated, with a   cellular concentration of 3 and 7 g/l (Berdugo <i>et al</i>., 2002). Trials   carried out with a cellular concentration of 3 g/l and at different organic   phase ratios, showed that a greater organic/aqueous ratio, allows a more   effective phase separation. Trials where reproduced at 60/40 and 40/60 ratios.   On the other hand, for a cellular concentration of 7 g/l, phase separation was   similar for 60/40 and 50/50 phase ratios. A smaller separation capacity was observed   for a organic/ aqueous phase ratio of 40/60.</p>     <p><b>Biodesulfurization reactions</b></p>     <p>Biodesulfurization reactions   were performed by using dibenzothiophene (DBT) in hexadecane (HXD) and Diesel   as a matrix in stirred tank reactors in scales of 200 ml, 1 liter and up to 5   liters of reaction volume. <a href="#fig5">Figure 5</a> presents the transformation kinetics of   dibenzothiophene (DBT) and benzothiophene (BT) by strain ICP172 in   desulfurization reactions through a &quot;resting cells&quot; technique.   Biodesulfurization reactions were developed with the biomass produced by fed   batch cultures (constant and exponential flux). Biomass activity was determined   through the detection of 2-HBP, the final metabolite of the 4S desulfurization   route. In these reactions, the sulfur removal level differed according to the   operation conditions; however, in all cases the removal levels were   approximately 10% of total sulfur. Although these removals are still to low to   comply with the standards set forth in international agreements, these   efficiencies can be improved through different strategies, including the   improvement of the biocatalyst, the design o new bioreactors and the design of   a sequential biodesulfurization reaction process with serial reactors.</p>     <p align="center"><img src="img/revistas/ctyf/v2n4/v2n4a5i7.jpg"><a name="fig5"></a></p>     <p>Biodesulfurization reactions   performed within the membrane reactor prototype allowed the detection of final   metabolite 2-HBP, as observed in <a href="#fig6">Figure 6</a>. These preliminary evaluations show a   qualitative analysis between a non-biotic system, a normal stirred-tank   bioreactor (STR) and a membrane bioreactor. The latter showed a great potential   for the improvement of biodesulfurization reactions and the development of new   catalytic/separation systems.</p>     <p align="center"><img src="img/revistas/ctyf/v2n4/v2n4a5i8.jpg"><a name="fig6"></a></p>     <p><b>FINAL CONSIDERATIONS</b></p>     <p>The oil industry currently   faces one of its greatest challenges: to optimize hydrocarbon production and   transformation processes, in order to obtain more efficient and cleaner   products, that meet international quality regulations and CO2, SOx, and NOx   emission controls. In this regard, we have analyzed how development of   biocatalytic processes featuring high efficiency and specificity levels can   become an alternative to the traditional refining processes. Around the world,   several microorganisms have been identified that possess the potential to drive   biotransformation of crude oil and its derivatives. Many of these microorganisms   have been genetically modified and many are still to be discovered, featuring   new and better characteristics, which may turn processes such as   biodesulfurization into a reality. At the Instituto Colombiano del Petr&oacute;leo,   significant advances have been achieved within the Latin American context,   achieving the identification and improvement of some biocatalysts that may be   useful in the development of such processes. Also, advances have been made in   the organic phase biocatalysis and crude oil bioprocessing areas. Emphasis on   these areas will help to overcome current technological barriers preventing the   biodesulfurization process from being successfully applied at industrial level.   The future of biorefining will likely take into consideration mixed, chemical   and/or biological processes, that may satisfy the very particular needs of the   oil industry, as recently proposed by Vazquez-Duhalt <i>et al</i>. (2002) in   their prospective analysis on the impact biochemical catalysis might have on   the oil industry. Vazquez-Duhalt (2002) present advances and impact of   biorefining processes (desulfurization, denitrogenation, heavy metal removal,   asphaltane processing, etc.) on an international context. They conclude, as we   do, that alternate or complementary biotechnological processes for traditional   refining can significantly increase the energetic efficiency and reduce the   environmental impact of current refining operations through the development of   the areas considered in this study.</p>     <p><b>ACKNOWLEDGEMENTS</b></p>     ]]></body>
<body><![CDATA[<p>The authors wish to express   their gratitude to Ecopetrol - ICP for the economical support in the   development of this study. Special gratitude to the research group in   Biorefining for their support and technical contribution in the development of   Hydrocarbons Biodesulfurization project. Likewise, acknowledgement should be   made to the technical support provided by the Chromatography Laboratory of   Universidad Industrial de Santander, specially to Dr. Helena Stashenko and Dr.   Miguel Angel Puerta in the elucidation of the microorganisms metabolic   route.</p>   <hr>     <p><b>BIBLIOGRAPHY</b></p>     <!-- ref --><p>Acero, J. R. and Mogoll&oacute;n, L., 2002.  &quot;Desarrollo de biocatalizadores hidrof&oacute;bicos y   termotolerantes mediante t&eacute;cnicas de evoluci&oacute;n dirigida&quot;. Revista Colombiana de Biotecnolog&iacute;a, Vol IV (1): 14-20.    &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[&#160;<a href="javascript:void(0);" onclick="javascript: window.open('/scielo.php?script=sci_nlinks&ref=000065&pid=S0122-5383200300010000500001&lng=','','width=640,height=500,resizable=yes,scrollbars=1,menubar=yes,');">Links</a>&#160;]<!-- end-ref --></p>     <!-- ref --><p>Acero, J., 2002. &quot;Development of DBT-monooxygenase mutants   by directed evolution for organic sulfur removal&quot;. Proceedings 9th Int Petroleum   Environmental Conference, October, Albuquerque, NM, USA.    &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[&#160;<a href="javascript:void(0);" onclick="javascript: window.open('/scielo.php?script=sci_nlinks&ref=000067&pid=S0122-5383200300010000500002&lng=','','width=640,height=500,resizable=yes,scrollbars=1,menubar=yes,');">Links</a>&#160;]<!-- end-ref --> </p>     <!-- ref --><p> Arnold, F. H., Wintrode, P. C., Miyazaki, K. and Gershenson, A., 2001.    &quot;How enzymes adapt: lessons from directed evoluction&quot;. Trends in Bioch. Sci., 26: 100-106.    &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[&#160;<a href="javascript:void(0);" onclick="javascript: window.open('/scielo.php?script=sci_nlinks&ref=000069&pid=S0122-5383200300010000500003&lng=','','width=640,height=500,resizable=yes,scrollbars=1,menubar=yes,');">Links</a>&#160;]<!-- end-ref --></p>     <!-- ref --><p>Berdugo, C., Caballero,   C. and Godoy,   R. D., 2002.  &quot;Aqueous-organic   phases separation by membrane reactors in biodesulfurization   reactions&quot;.  CTYF-Ciencia, Tecnolog&iacute;a and Futuro, 2 (3): 97-112.    &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[&#160;<a href="javascript:void(0);" onclick="javascript: window.open('/scielo.php?script=sci_nlinks&ref=000071&pid=S0122-5383200300010000500004&lng=','','width=640,height=500,resizable=yes,scrollbars=1,menubar=yes,');">Links</a>&#160;]<!-- end-ref --></p>     ]]></body>
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